EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Paper list for equivariant neural network

Jupyter widget to interactively view molecular structures and trajectories

Aggregate results from bioinformatics analyses across many samples into a single report.

R package to infer biological activities from omics data using a collection of methods.

Docker Certified Associate Exam Preparation Guide

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

Multi-Omics Factor Analysis

CUT&RUN and CUT&Tag data processing and analysis

shinyWidgets : Extend widgets available in shiny

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Multi-Omics Factor Analysis

R Shiny application for interactive analysis of networks created by vosonSML.

R package, using vis.js library for network visualization

Collection of modular Cytoscape tutorials for online presentation using reveal.js

Analysis and figure code from Alley et al. 2019.

uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)

Python library to handle Gene Ontology (GO) terms

Easily view PyPI download statistics via Google's BigQuery.

Listing of papers about machine learning for proteins.

Quickly and accurately render even the largest data.

'ggplot2' Based Publication Ready Plots

Toolkit for processing sequences in FASTA/Q formats

Directed graph layout for JavaScript

Fast Gene Set Enrichment Analysis

📊 A universal enrichment tool for interpreting omics data

A curated list of awesome deep learning applications in the field of computational biology