v1.9.0 (2025-12-19)

This release is published under the MIT License.

Documentation

• Add models notebook (247b7cf)

• Refine models notebook, update README (42f0c15)

Features

• Add fathomnet-rest-api 2.3.0 endpoints (266a7a7)

• Align with new review states API, fix tests (676895c)

Detailed Changes: v1.8.1...v1.9.0

v1.8.1 (2025-04-08)

This release is published under the MIT License.

Bug Fixes

• fathomnet-generate: Use new DTO BaseModel syntax for model copy and JSON dump (8611d68)

Chores

• Add CITATION.cff (d4cc5a5)

Testing

• Temporarily disable tests for broken endpoints (efdbede)

Detailed Changes: v1.8.0...v1.8.1

v1.8.0 (2025-03-03)

This release is published under the MIT License.

Bug Fixes

• Fix typing for Python 3.8, 3.9 (bb29e5f)

Chores

• Correct syntax for setting PATH in CI/CD workflow (a694975)

Features

• Migrate from fathomnet.org to database.fathomnet.org; rye -> uv; dataclasses_json -> pydantic (fc86d07)

Detailed Changes: v1.7.1...v1.8.0

v1.7.1 (2024-11-11)

Bug Fixes

• Remove debug print statements from find_by_display_name function, worms test (092d807)

Chores

• Update CI/CD workflow to set PATH for Rye installation (6959642)

v1.7.0 (2024-11-04)

Chores

• chore: add docs rye script for building docs (66e97f5)

• chore: swap Poetry for Rye build system (e698cd6)

Code Style

• style: apply ruff linting & formatting (1bdc3d8)

Documentation

• docs: slight tweaks to README.md (0895d5c)

• docs: fix badge display in README.md (7c6dd4b)

• docs: update README.md with badges (2fe5256)

• docs: add CONTRIBUTING.md (befbcf0)

Features

• feat: add function to retrieve owner institution codes by image UUID (773290a)

v1.6.1 (2024-08-01)

Fix

• fix: fix bbox conversion to Pascal VOC to use 1-based pixel index (440afb0)

v1.6.0 (2024-07-18)

Feature

• feat: allow a start page number in fathomnet.util.page (62ca914)

v1.5.1 (2024-07-16)

Fix

• fix: fix typo in -f option for fathomnet-generate (c304ce1)

v1.5.0 (2024-07-16)

Chore

• chore: apply pre-commit hook on all files (0190345)

• chore: add Python 3.12 to CI pipeline targets (cf979cf)

• chore: add formatting/linting pre-commit setup (ca07b19)

Documentation

• docs: move tutorial notebook into examples dir (c4db176)

• docs: switch order of imports/pip install in tutorial notebook

switched order of imports to avoid ipyleaflet error with fathomnet install and added explanation on running outside of colab. (#28) (48afc49)

• docs: fix broken readthedocs build #27

Install the current package (fathomnet-py) prior to building the Sphinx docs via RTD (3154b79)

Feature

• feat: add YOLO dataset generation to fathomnet-generate (1bacb1f)

Fix

• fix: make TEST_X_API_KEY use an environment variable of the same name (22508cf)

Unknown

• Merge branch 'develop' (8202949)

• Merge branch 'main' into develop (4a29a68)

• add accepted flag to worms.get_descendants_names

Add support for worms-server 0.5.2 (0dc9ed8)

v1.4.0 (2024-04-09)

Feature

• feat: add accepted flag to worms.get_descendants_names

Add support for worms-server 0.5.2 (de0aec2)