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What information is included within the string-to-digest? #8

@nsheff

Description

@nsheff

We need to confirm the final contents of the string to digest. Right now, I think we had settled on these elements:

contents

  • name (e.g. chr1)
  • length
  • topology
  • sequence digest (refget digest)

constraints:

Related to this, I initially described this with a JSON-schema that I use in my implementation, but this is a bit more complicated because it encodes the recursion (the fact that the sequence digest element is itself a top-level refgettable element., But, for reference if anyone's interested, it's here:

https://github.com/refgenie/seqcol/blob/master/seqcol/schemas/AnnotatedSequenceList.yaml

Open for discussion.

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