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1. f1-machine-learning-final f1-machine-learning-final Public

   ML Applications for Podium Predictions (Binary Classification Problem)

   R

2. deseq-workflow deseq-workflow Public

   This repository includes an shell script that will prepare a GEM for DESeq analysis. It also includes R script to run deseq.

   R

3. gene_network gene_network Public

   Workflow for gene co-expression and regulatory network

   Python

4. perturb-viz perturb-viz Public

   This script visualizes perturbed genes identified by GEMDiff in a network context, highlighting connections between perturbed genes and top differentially expressed genes.

   Python

5. somatic_variant_finder somatic_variant_finder Public

   A Python utility tool for finding gene mutations in MAF file format.

   Python

6. transcribe-translate transcribe-translate Public

   Jupyter Notebook