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New tool request: PIRATE

tool request

Status: Open.

#7614 In galaxyproject/tools-iuc;

· SaimMomin12 opened on Jan 23, 2026

Bring credential-requiring tools in line with the new tool schema

Status: Open.

#7591 In galaxyproject/tools-iuc;

· RZ9082 opened on Jan 15, 2026

chromap tool request

tool request

Status: Open.

#7589 In galaxyproject/tools-iuc;

· bgruening opened on Jan 15, 2026

Please install genome annotation tools EviAnn, mikado, portcullis and PSAURON

tool request

Status: Open.

#7570 In galaxyproject/tools-iuc;

· arslan9732 opened on Jan 3, 2026

Please install CRAQ and inspector

tool request

Status: Open.

#7569 In galaxyproject/tools-iuc;

· arslan9732 opened on Jan 3, 2026

Tracking issue for tool dev SIG on January 22nd

cofest

Status: Open.

#7532 In galaxyproject/tools-iuc;

· bernt-matthias opened on Dec 11, 2025

Review tools using bash variables (in particular with cp/mv)

Status: Open.

#7520 In galaxyproject/tools-iuc;

· bernt-matthias opened on Dec 9, 2025

Tools for Antimicrobial Resistance Analysis

tool request

Status: Open.

#7516 In galaxyproject/tools-iuc;

· bebatut opened on Dec 8, 2025

seurat_clustering fails to run FindClusters

Status: Open.

#7509 In galaxyproject/tools-iuc;

· erikdorthe opened on Dec 3, 2025

Some parameters of IQ-TREE such as --date-tip and --date-ci are not passed into the command line

Status: Open.

#7503 In galaxyproject/tools-iuc;

· jerryakii opened on Dec 2, 2025

Wrap HAL command-line tools for Galaxy

tool request

Status: Open.

#7476 In galaxyproject/tools-iuc;

· SaimMomin12 opened on Nov 17, 2025

Busco: The option to download lineage data has been removed, but there are missing files for many lineages in CVMFS data

Status: Open.

#7462 In galaxyproject/tools-iuc;

· cat-bro opened on Nov 16, 2025