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aECG (Python parser for annotated ECG HL7 files)

Python library to parse and visualize aECG files.

Demo

Open in Streamlit

Installation

pip install aecg

Usage

  • Read your aECG xml file.
import aecg

file_path = r"tests/data/Example aECG.xml"
aecg_o = aecg.read(file_path)
  • Use summary to get an overview of the data.
aecg_o.summary()
{
    'id': UUID('61d1a24f-b47e-41aa-ae95-f8ac302f4eeb'),
    'date': datetime.datetime(2002, 11, 22, 9, 10),
    'series_count': 1,
    'annotations_count': 167,
}
  • Get waveforms dataframes and their associated plots.
titles = []
dfs = []
figs = []

for serie in aecg_o.series:
    for i, seq_set in enumerate(serie.sequence_sets, 1):
        title = f"Serie {serie.id} | Sequence set {i}"
        df = seq_set.get_sequences_df()
        fig = aecg.plotter.plot_seq_set(df, title=title)
        dfs.append(df)
        titles.append(title)
        figs.append(fig)

    for i, seq_set in enumerate(serie.derived_sequence_sets, 1):
        title = f"Serie {serie.id} | Derived sequence set {i}"
        df = seq_set.get_sequences_df()
        fig = aecg.plotter.plot_seq_set(df, title=title)
        dfs.append(df)
        titles.append(title)
        figs.append(fig)
dfs[0]

figs[0].show()

  • You can choose to plot all the curves together.
aecg.plotter.plot_seq_set(dfs[0], plot_mode="one")

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Python parser and viewer for Annotated ECG HL7 files.

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