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Some variants will have None reference or alternate bases (e.g., indels). Previously, a None in the coordinate query would match any reference or alternate base (i.e., act as a de-facto wildcard).

This PR changes this behavior so that using None in your query for your reference and/or alternate base will only match variants with no reference and/or alternate base. A new wildcard character * is introduced which can be used in the coordinate query for reference or alternate alleles and match any reference alleles or alternate alleles (including variants without reference or alternate alleles).

@susannasiebert susannasiebert requested a review from ahwagner May 14, 2020 15:41
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Nice work.

@susannasiebert susannasiebert merged commit 144dcb9 into master May 18, 2020
@susannasiebert susannasiebert deleted the search_wildcard branch May 19, 2020 17:50
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2 participants