Berkeley 20180614 #14
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…witched to usage of ./classes in accordance with ant's build file build.xml
…d.jar and ./test/ahrd_output.csv
…istent ReferenceProteins from it.
… Setting of max log file size did not work.
…uting performance scores.
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Re-introducing the usage of Berkeley-Db resulting in tremendous speedup of AHRD's performance. Requested by members of the Helmholtz centre in Munich. Please pull changes.