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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 188 repositories
  • hra-registrations Public

    Manually curated HRA Dataset Graphs

    hubmapconsortium/hra-registrations’s past year of commit activity
    HTML 1 MIT 0 14 0 Updated Oct 24, 2025
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 17 1 Updated Oct 24, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 6 MIT 5 114 17 Updated Oct 24, 2025
  • search-api Public

    HuBMAP search service and associated pieces to create an index

    hubmapconsortium/search-api’s past year of commit activity
    Python 2 MIT 2 22 2 Updated Oct 24, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 84 (1 issue needs help) 0 Updated Oct 24, 2025
  • api-base-image Public
    hubmapconsortium/api-base-image’s past year of commit activity
    Dockerfile 0 0 1 0 Updated Oct 23, 2025
  • dataset-metadata-spreadsheet Public

    This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corresponds to a particular assay or tissue sample used to produce the dataset.

    hubmapconsortium/dataset-metadata-spreadsheet’s past year of commit activity
    1 MIT 0 0 0 Updated Oct 23, 2025
  • hra-workflows Public

    hra-workflows: HRA workflows for processing experimental data via the DCTA

    hubmapconsortium/hra-workflows’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 23, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 6 79 8 Updated Oct 23, 2025
  • user-templates-api Public
    hubmapconsortium/user-templates-api’s past year of commit activity
    Jupyter Notebook 0 MIT 3 3 1 Updated Oct 23, 2025
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