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Starred repositories
💫 Toolkit to help you get started with Spec-Driven Development
Community-contributed instructions, prompts, and configurations to help you make the most of GitHub Copilot.
User-friendly AI Interface (Supports Ollama, OpenAI API, ...)
A configuration framework that enhances Claude Code with specialized commands, cognitive personas, and development methodologies.
⚡️ GenBI (Generative BI) queries any database in natural language, generates accurate SQL (Text-to-SQL), charts (Text-to-Chart), and AI-powered business intelligence in seconds.
FULL Augment Code, Claude Code, Cluely, CodeBuddy, Comet, Cursor, Devin AI, Junie, Kiro, Leap.new, Lovable, Manus Agent Tools, NotionAI, Orchids.app, Perplexity, Poke, Qoder, Replit, Same.dev, Trae…
Run the latest vscode-server on RHEL/CentOS 7!
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
A collection of genomics software tools written in Rust
Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI
Send push notifications to your phone or desktop using PUT/POST
🔥 🔥 🔥 Open Source JIRA, Linear, Monday, and Asana Alternative. Plane helps you track your issues, epics, and cycles the easiest way on the planet.
Fast and scalable R application deployment and orchestration
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
ATLAS - Three commands to start analyzing your metagenome data
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
A Rust library and command line tool for working with genomic ranges and their data.
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
A bioinformatics tool for working with modified bases
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
MGnify genome analysis pipeline
Portable WDL workflows for CZ ID production pipelines
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids