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Partaker Tool

This tool analyzes time-lapse microscopy images from bacteria, segments them and performs fluorescence and morphological analysis. It allows you to create plots like this one:

Example plot

Installing

First, if you do not have uv installed, go to the uv official installation page

Then simply run

uv run gui

Which will download and install dependencies and run the main GUI. If there are no problems, you should have the main window as below.

Main window

Documentation

You can check the tutorial in the project's github pages

Contributing

Feel free to contribute to the project. Talk to the maintainers. Try to use conventional commits

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Tool to analyze bacterial fluorescence in time-lapse microscopy

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