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Ligand builders: Support vertical alignment of superatom symbols #74

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Merged
merged 30 commits into from
Oct 9, 2025
Merged

Ligand builders: Support vertical alignment of superatom symbols #74

merged 30 commits into from
Oct 9, 2025

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@hgonomeg hgonomeg commented Sep 11, 2025 •
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Closes #73

@hgonomeg hgonomeg self-assigned this Sep 11, 2025
hgonomeg added 26 commits October 2, 2025 17:42
@hgonomeg
Begin adding support for vertical alignment of superatom symbols
e1fe950
@hgonomeg
Prepare for implementing vertical text
5cab5ea
@hgonomeg
Experiment with vertical appendix rendering for Layla (Lhasa needs mo…
15b97ba 
…re work)
@hgonomeg
Rework determining vertical alignment of superatoms
d828830
@hgonomeg
Extend TextSpan representation with a third variant - Newline
001caa8
@hgonomeg
Implement support for correct offseting while rendering vertical appe…
9fdf6cb 
…ndices/superatoms
@hgonomeg
Try to debug Lhasa renderer exploding with Newlines
5e12293
@hgonomeg
An unsuccessful attempt at fixing hashing memory corruption
5cc8f84
@hgonomeg
Attempt switching to newer library versions for Lhasa
0d5e43e
@hgonomeg
Fix Boost download
0dd6a90
@hgonomeg
Try to fix boost build
ce3fd8b
@hgonomeg
Fix the RDKit build
0fd4c9a
@hgonomeg
Try to fix Lhasa build
502ebbc
@hgonomeg
Switch back to Boost 1.89
b8c9192
@hgonomeg
Remove unknown warning flag
726331f
@hgonomeg
Fix double definition of C++ standard
61c5fd6
@hgonomeg
Try to fix the hashing implementation
d06c378
@hgonomeg
Finally fix the memory corruption / infinite recursion while hashing …
9d749f9 
…TextSpans...
@hgonomeg
Enable RDKit Inchi API for standalone Lhasa builds
6ba68d0
@hgonomeg
Temporarily disable triggering vertical superatoms
931d310
@hgonomeg
Revert "Temporarily disable triggering vertical superatoms"
ffebe3f 
This reverts commit 931d310.
@hgonomeg
Only trigger vertical alignment of superatoms inside corners
b25f73f
@hgonomeg
Extract constant magic number
8bb34b0
@hgonomeg
Try to debug nonsensical reversedness state in vertical superatoms
59005cc
@hgonomeg
Fix nonsensical reversedness state in vertical superatoms
0ce4622
@hgonomeg
Try to make charges more elegant-looking with vertical superatoms
bbd0675
@hgonomeg hgonomeg marked this pull request as ready for review October 9, 2025 23:58
@hgonomeg hgonomeg merged commit 98b90d1 into main Oct 9, 2025
2 of 5 checks passed
@hgonomeg hgonomeg deleted the support_vertical_alignment_of_superatom_symbols branch October 9, 2025 23:58
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Ligand builders: Support vertical alignment of superatom symbols

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@hgonomeg @pemsley