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herb-transcribe Public
Tooling for LLM-assisted herbarium labels transcription
Python MIT License UpdatedJul 21, 2025 -
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vc-gatk4-snakemake Public
Basic multi-sample variant calling workflow with GATK
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 26, 2024 -
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clouddiamond Public
Large-scale cloud diamond run on arabidopsis thaliana accessions
MIT License UpdatedAug 20, 2024 -
gretl Public
Forked from MoinSebi/gretlStatistics and analysis for variation graphs
Jupyter Notebook MIT License UpdatedJul 29, 2024 -
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MethylScore Public
Forked from Computomics/MethylScoreIdentification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling
Perl Other UpdatedJan 26, 2023 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedOct 10, 2022 -
alphafold_sm Public
Forked from nick-youngblut/alphafold_smsnakemake wrapper for alphafold
Python MIT License UpdatedJul 4, 2022 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedNov 17, 2021 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
HTML MIT License UpdatedNov 4, 2021 -
miniforge Public
Forked from conda-forge/miniforgeA conda-forge distribution.
Shell Other UpdatedOct 13, 2021 -
repet3-install Public
Install Repet 3, including MySql, without sudo rights
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blobtools Public
Forked from DRL/blobtoolsModular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Python GNU General Public License v3.0 UpdatedDec 7, 2020 -
rstudio-server-conda Public
Forked from grst/rstudio-server-condaRun Rstudio Server in a conda environment
Shell MIT License UpdatedNov 25, 2020 -
juicer Public
Forked from aidenlab/juicerA One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Shell MIT License UpdatedOct 21, 2020 -
canu Public
Forked from marbl/canuA single molecule sequence assembler for genomes large and small.
C++ UpdatedOct 21, 2020 -
TIGER_Scripts-for-distribution Public
Forked from betharowan/TIGER_Scripts-for-distributionall of the tiger scripts plus input and output examples
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parkour Public
Forked from maxplanck-ie/parkourAn open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)
JavaScript GNU General Public License v3.0 UpdatedSep 29, 2020 -
Beeline Public
Forked from Murali-group/BeelineBEELINE: evaluation of algorithms for gene regulatory network inference
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freebayes Public
Forked from freebayes/freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
C++ MIT License UpdatedAug 19, 2020 -
snakemake_profiles Public
Forked from leylabmpi/snakemake_profilessnakemake profiles for cluster configuration
Python MIT License UpdatedAug 11, 2020 -
xDrip-plus Public
Forked from jamorham/xDrip-plusEnhanced personal research version of the xDrip android app
Java GNU General Public License v3.0 UpdatedJan 26, 2020 -
pbbioconda Public
Forked from PacificBiosciences/pbbiocondaPacBio Secondary Analysis Tools on Bioconda
BSD 3-Clause Clear License UpdatedSep 13, 2019 -
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swirl_courses Public
Forked from swirldev/swirl_courses🎓 A collection of interactive courses for the swirl R package.
R Other UpdatedApr 16, 2019 -
DALIGNER Public
Forked from PacificBiosciences/DALIGNERFind all significant local alignments between reads
C Other UpdatedFeb 5, 2019
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