Fix sed usage in custom annotator test

…d-configuration

Fix WebAssembly build setup

…x_tools_to_path.sh

Fix path script for modern find

Fix newline issues in ignore files

…ing-logic

Improve alignment checker memory usage

…-output

Make haplotype extractor debug optional

…s.txt-and-dockerfile

Add missing newline at EOF

…or-drop-library

Add reusable utilities to vcfx_core

…s-files-line-by-line

Refactor VCFX_merger to stream variants

…date-yaml-in-workflows

Fix YAML workflow files

…project

Add CI workflow for building and testing

…ompressed-streams

Add gzip input support

Switch docs/tests to public container

…ble-in-test_docker.sh

Make Docker tests optional

Fix docs for AF filter and missing genotype pipeline

Add version flag documentation

Fix variant mode flag documentation

…new-sections

Add annotation and processing categories

Update utility count in citation docs

…ands-and-documentation

Update concordance docs

…ity-and-colors

Improve dark mode readability

…packaging

Fix Python bindings

Fix Docker build dependencies

Add Python wrappers and wheel CI

Extend Python bindings

…commands

Add docs command to vcfx wrapper

Fix YAML syntax