openVRE provides a modular, extensible Virtual Research Environment framework for integrating tools, workflows, and data repositories within collaborative scientific infrastructures._

1.1 What is openVRE
1.2 Key Features
1.3 Architecture
1.4 Core Components
1.5 Supported Technologies

2.1 Installation Guide
2.2 Configuration
2.3 Quick Start

3.1 User Interface Overview
3.2 Running Tools and Workflows
3.3 Data and Repository Management

4.1 Bring Your Own Tool (BYOT)
4.2 Bring Your Own Tool — Dockerized
4.3 Register a New Interactive Tool
4.4 Register a New Tool
4.5 Puggable Resources
4.6 Visualizers
4.7 Repository Interfaces

5.1 User and Permissions Management
5.2 Monitoring and Logs
5.3 Updating and Maintenance
5.4 Backup and Recovery

6.1 Development Environment Setup
6.2 API Reference
6.3 Contributing Guidelines

7.1 FAQ
7.2 Troubleshooting
7.3 Citation and Acknowledgements
7.4 License

Refer to the Installation Guide for detailed steps on setting up openVRE in your environment.