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Showing results

Python package for Probe set selection for targeted spatial transcriptomics.

Python 48 8 Updated Nov 8, 2025

An AI agent for spatial biology

Python 142 16 Updated Feb 22, 2026

SPAdes Genome Assembler

C++ 910 159 Updated Feb 2, 2026

single-cell decorrelated module networks

Python 30 2 Updated Aug 24, 2024

Tool for plotting sequencing data along genomic coordinates.

Python 336 15 Updated Dec 12, 2025

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Python 180 52 Updated Dec 13, 2025

SHOOT.bio - the phylogenetic search engine

Python 27 4 Updated Jun 1, 2023

Analyzing and visualizing KEGG information using the grammar of graphics

R 239 17 Updated Oct 14, 2025

Recovering genes from targeted sequence capture data

Python 132 45 Updated Jan 9, 2026

Discovery of putative toxin facilitator proteins in diverse venomous species

HTML 1 Updated Aug 29, 2023

Singularity recipe for AlphaFold

Python 36 13 Updated Nov 12, 2024

snakemake pipeline for creating trees from sequence sets

Jupyter Notebook 98 17 Updated Feb 13, 2026
R 5 Updated Sep 29, 2021

UniProt Id Mapping through API

Python 36 4 Updated Sep 22, 2025

A tool for representing genomic potential and transcriptomic expression into KEGG pathways

Python 61 7 Updated Jul 28, 2024

A tool for domain based annotation with databases from the Conserved Domains Database

HTML 30 3 Updated Sep 20, 2024

MOSca's GUI TO perform meta-omics analyses

HTML 2 2 Updated May 22, 2023

Meta-Omics Software for Community Analysis

Python 37 5 Updated Nov 4, 2024
Perl 5 4 Updated Aug 7, 2023

Autophy is a CLI python package used to cluster labels phylogenetic trees.

Jupyter Notebook 1 3 Updated Aug 16, 2023

Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets

Perl 17 2 Updated Sep 19, 2023

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

Python 113 17 Updated Sep 2, 2025
Python 109 29 Updated Nov 28, 2023

Align proteins to genomes with splicing and frameshift

C 395 21 Updated Jan 5, 2026

Nail is an Alignment Inference tooL

Rust 55 3 Updated Feb 21, 2026

A community fork of a language named after a plant fungus. All of the memory-safe features you love, now with 100% less bureaucracy!

Rust 5,104 63 Updated Aug 19, 2024

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Python 366 94 Updated Aug 1, 2025