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riboseq-flow Public
A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
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riboseq Public
Forked from nf-core/riboseqPipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
Nextflow MIT License UpdatedDec 4, 2025 -
clipseq Public
Forked from nf-core/clipseqCLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Nextflow MIT License UpdatedDec 2, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedNov 19, 2025 -
nextflow_in_action Public
"Nextflow in Action: Design and Implement Your Own Bioinformatics Workflows" workshop
12 UpdatedJun 4, 2025 -
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training Public
Forked from nextflow-io/trainingNextflow training material
Nextflow Other UpdatedMar 28, 2025 -
tosca Public
Forked from amchakra/toscaNextflow analysis pipeline for hiCLIP and proximity ligation sequencing data
Nextflow MIT License UpdatedMar 11, 2025 -
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test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedApr 23, 2024 -
preprocess_reads Public
A Nextflow DSL2 pipeline for pre-processing PE reads for downstream analyses
MIT License UpdatedFeb 14, 2024 -
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germ Public
Forked from ulelab/germAn algorithm for scoring Generalised RNA Multivalency
R MIT License UpdatedSep 14, 2023 -
oneliners Public
Forked from stephenturner/onelinersUseful bash one-liners for bioinformatics.
1 UpdatedJun 10, 2019
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