On-demand atlas construction for any neuroimaging study

[NeurIPS 2025 D&B] Open-source Multi-agent Poster Generation from Papers

Successful Job Applications and Grants

[ICCV'25] SegAnyPET: Universal Promptable Segmentation from Positron Emission Tomography Images

A curation of medical image registration papers and source codes. This repository is actively maintained by MICCAI SIG-BIR.

Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

An accurate, adaptable, and automated AI pipeline called non-human primates Brain Extraction and Segmentation Toolbox (nBEST) for processing NHPs from multi-species, multi-site, and multi-developme…

Repo to hold holiday recipes. Please feel free to contribute!

Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

Official repository for the ReMIND2Reg Challenge

geodesic distance transform of 2d/3d images

A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration

Cloud-based data annotation tools for biological images

A comprehensive list of papers on learning-based image registration, as well as python implementation of various loss functions and evaluation metrics for medical image registration

This is the official site of HACA3 harmonization algorithm.

[CVPR'24 Highlight] Official PyTorch implementation of CoDeF: Content Deformation Fields for Temporally Consistent Video Processing

Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

This is the official Pytorch implementation of "Unsupervised Deformable Image Registration with Absent Correspondences in Pre-operative and Post-Recurrence Brain Tumor MRI Scans" (MICCAI 2022), wri…

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

A library for performing image registration using deep learning, regularized by inverse consistency

Image Registration and Computational Anatomy in PyTorch

Supervised Predictive Medical Image Registration Model

Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment

Deep Whole Brain Segmentation Using SLANT Method