Feel free to update this list to include your own project.

• Amsterdam Modeling Suite -- Making Computational Chemistry Work For You
• cctrack -- Cyclone Tracking Software based on the Sinclair algorithm.
• ChiDG -- A Chimera-based, discontinuous Galerkin solver
• Copernicus -- Spacecraft Trajectory Design and Optimization Program
• CP2K -- Quantum chemistry and solid state physics software package
• CPL Library -- Communications and topology management system for coupling any CFD solver to any molecular dynamics code written in either Python, C, C++ or Fortran.
• cpl-library -- CPL Library is a communications and topology management system for coupling any continuum fluid dynamics (CFD) solver to any molecular dynamics (MD) code written in either Python, C, C++ or Fortran.
• EMsoft -- Electron Microscopy Diffraction and Image Computations
• feff85exafs -- Feff for EXAFS: Open Source theoretical EXAFS fitting standards
• GENESIS -- Molecular Dynamics software.
• libblas -- BLAS for Rust
• Neko -- Portable framework for high-order spectral element flow simulations.
• neural-fortran -- A parallel neural net microframework
• noresm2cmor -- A command line tool for post-processing NorESM output using the Climate Model Output Rewriter (cmor) libraries
• OpenPDE -- Open Environment for solving PDE
• PLMC -- A simple Physics of Liquids Monte Carlo simulation code
• ReMKiT1D -- Reactive Multifluid and Kinetic Transport in 1D
• SEMBA-FDTD -- Finite-differences in time domain solver with special focus on EMC problems.
• SIMPLE -- Single-particle IMage Processing Linux Engine (SIMPLE) is an open-source software package for analysis of cryogenic transmission electron microscopy (cryo-EM) movies of single-particles (Single-Particle Analysis, SPA).
• Simstrat -- a one-dimensional physical lake model coupled to a biogeochemical library.
• West -- WEST (Without Empty STates) is a massively parallel software for large scale electronic structure calculations within many-body perturbation theory.
• WumingPIC2D -- Two-dimentional, special relativistic, electromagnetic particle-in-cell simulation code for general puposes in space and astrophysical plasmas.

[Google Scholar Search]

• J. Williams, R. D. Falck, and I. B. Beekman. "Application of Modern Fortran to Spacecraft Trajectory Design and Optimization", 2018 Space Flight Mechanics Meeting, AIAA SciTech Forum, (AIAA 2018-1451)
• M. D. Hanwell, W. A. de Jong, and C. J. Harris, "Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application", J Cheminform. 2017; 9: 55.
• J. Hodson, D. F. Hunsaker, and R. Spall, "Wing Optimization using Dual Number Automatic Differentiation in MachUp", 55th AIAA Aerospace Sciences, 2017.
• E. Pagone, M. Jolly, and K Salonitis, "The Development of a Tool to Promote Sustainability in Casting Processes", Procedia CIRP, Vol. 55, 2016, p. 53–58.
• J. Williams, "A New Plugin Architecture for the Copernicus Spacecraft Trajectory Optimization Program", AAS/AIAA Astrodynamics Specialist Conference, Vail, Colorado, Aug. 2015. AAS 15-606.