LongcallR is a SNP caller for single molecule long-read RNA-seq data

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

Leaflet is a probabilistic model that identifies latent cell states defined by splicing changes.

Pan-transcriptomic phenotyping

Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

R package to estimate sharing between two arrays of p-values

A tool for analyzing trascriptomes of millions of single cells.

Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models

Analysis code and results for dreamlet

upload big files to Zenodo using cURL, jq and bash

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

Data Portal for NYGC ALS Spinal Cord

Single cell analysis in the browser

A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) using a standardised data processing and pseudobulk differential…

Code repository for analysis in "Divergent impacts of C9orf72 repeat expansion on neurons and glia in ALS and FTD"

Suite of heritability and genetic correlation estimation tools for exome-sequencing data

Create curved text paths in ggplot2

A tool to facilitate comparative visualisation of CLIP data

An R package for creating mirrored Manhattan plots

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

SNPbrowser is project written in python to display results from Genome-Wide Association Studies (GWAS) with a wide range of possibilities, including overlap of multiple studies.

job: free Your RStudio Console

Reference-guided transcript discovery and quantification for long read RNA-Seq data