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sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedFeb 15, 2022 -
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GenGraph Public
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
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MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedJul 5, 2021 -
MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedJul 4, 2021 -
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django-governance-platform Public
Forked from django-helpdesk/django-helpdeskA Django application to manage tickets for an internal helpdesk. Formerly known as Jutda Helpdesk.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 26, 2021 -
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h3agwas Public
Forked from h3abionet/h3agwasGWAS Pipeline for H3Africa
Python Other UpdatedOct 9, 2020 -
vcf2fasta Public
A python tool to convert a vcf file to an aligned fasta file
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uct-srst2 Public
Forked from uct-cbio/uct-srst2MLST using srst2, implemented in Nextflow
Nextflow GNU General Public License v3.0 UpdatedMay 22, 2019 -
This tool allows for the detection of large deletions in haploid organisms such as bacteria.
Python UpdatedFeb 19, 2019 -
git_lecture_old Public
A repo containing materials for the lecture on git
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TEAR Public
A repository for the Transposable Element Analysis for RIP (TEAR) tool.
Python UpdatedJun 29, 2014 -
Genome_stats_tools Public
This is a collection of tools for getting the required information about a genome out of GFF and fasta files
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