A web application for genome resources at the Umeå Plant Science Center.

The backend is a FastAPI application using a uvicorn server. It also hosts the static files generated by the yarn build of the react frontend.

React frontend in typescript is located under the Python FastAPI application. The yarn build generates a build output under ./plantgenie_heatmaps/pg-react-frontend/dist, which FastAPI points to /static/.

The dockerfile contains a multi-stage build of the react and fastapi applications. The output of the yarn build step is copied over into the second stage where the fastapi application is built. The FastAPI application can then just pick up the static files.

For local testing you can run:

docker build -t pg-heatmaps:local-latest -f Dockerfile .

docker run -it -p 8080:80 pg-heatmaps:local-latest

The docker container will expose port 80 where the uvicorn server is running and the above run command will map it to your localhost 8080 port.

Currently hosted on goodall on the upsc network. Must either be on eduroam or the UMU VPN. On Google Chrome you may have to set:

--unsafely-treat-insecure-origin-as-secure=<goodall-domain>

as Chrome may block outgoing requests that result from UI interactions.