Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

Toolkit to analyze genomic variation data, built on the GATK with Clojure

Painlessly create beautiful matplotlib plots.

scikit-learn: machine learning in Python

STORMSeq: Scalable Tools for Open-source Read Mapping

💀 The former home of Homebrew/homebrew (deprecated)

Generic Django Project I Use For All New Applications

Seamlessly add realtime notifications to your existing Django project.

Makes it easy to run a SockJS server in Django through Tornado.

Django chat application using different realtime technologies. Out of date! See https://github.com/centrifugal/centrifugo and https://github.com/django/channels

This is the code from my Django and Socket.IO realtime tutorial which you can find at http://maxburstein.com/blog/realtime-django-using-nodejs-and-socketio/

Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets

This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main …

Software for manipulating and visualizing Complete Genomics data, with a focus on cancer

The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites

The gkno launcher for executing tools or pipelines

Incubator for useful bioinformatics code, primarily in Python and R

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more