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jazminvaleriano/README.md

Towards Msc in Bioinformatics 🎓

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  1. virus_metagenomics virus_metagenomics Public

    Viral Metagenomics pipeline for characterization of swine nasal swab samples using Oxford Nanopore reads.

    Jupyter Notebook

  2. RNAseq-differential-expression RNAseq-differential-expression Public

    Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.

    Shell 1

  3. assembly_annotation assembly_annotation Public

    Pipeline for genome assembly and annotation of an Arabidopsis thaliana accession, including quality control, assembly comparison, repetitive element annotation, and comparative genomics analysis.

    Jupyter Notebook 1

  4. imputation_lipidomics imputation_lipidomics Public

    R

  5. proteomics proteomics Public

    Shell

  6. travel_planner travel_planner Public

    Optimal travel itinerary generator. Project for the course 473540: Advanced Python at the University of Bern.

    Python