Static, Interactive and Fully Responsive Single Page Website designed as Wedding Invitation from imaginary lovebirds Aman and Gur.

This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.

Software to call ROHs

A nextflow pipeline which executes treemix on a population of interest

The Poseidon Community Archive (PCA). ⚠️ Download from here: https://server.poseidon-adna.org/explorer/community-archive 🚫 NOT from GitHub. Do NOT clone without GIT_LFS_SKIP_SMUDGE=1.

This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.

Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.

Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

An aDNA aware short-read mapper

AGAR Workshop, 2022

Pipeline to take VCF through to Selection Analysis.

mapping pipeline for ancient DNA