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Rename Softwareheader.R to Softwareheader.r #32

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Merged
jcolomb merged 4 commits into from
Oct 19, 2020
Merged

Rename Softwareheader.R to Softwareheader.r #32

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c195064
Rename Softwareheader.R to Softwareheader.r
jcolomb Oct 19, 2020
0ceec99
Update and rename app.R to app.r
jcolomb Oct 19, 2020
b5d9df2
Update and rename app.R to app.r
jcolomb Oct 19, 2020
a91b10d
Update README.md
jcolomb Oct 19, 2020
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -14,7 +14,7 @@ This repository was developed using Rstudio and has many dependencies.

# Installation

Clone or download this repository. Run `source(analysis/Installation_Rpackages.R)` to install dependencies.
Clone or download this repository. Run `source(analysis/Installation_Rpackages.r)` to install dependencies.

Now open the shiny apps in Rstudio and click the run button or type `shiny::runApp('analysis/shiny__Analyse_data')`. You will open the data analysis software to analyse predetermined datasets.

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2 changes: 1 addition & 1 deletion Softwareheader.R → Softwareheader.r
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Expand Up @@ -8,4 +8,4 @@ distributed under the MIT license,

Available on <a href =https://doi.org/10.5281/zenodo.1162721>zenodo</a>

</h5>')
</h5>')
9 changes: 4 additions & 5 deletions analysis/shiny__Analyse_data/app.R → analysis/shiny__Analyse_data/app.r
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Expand Up @@ -35,7 +35,6 @@ library (stringr)
library(gridExtra)
library(RGraphics)
source ("Rcode/functions.r")
source ("../Softwareheader.R")

source <- function (file, local = TRUE, echo = verbose, print.eval = echo,
exprs, spaced = use_file, verbose = getOption("verbose"),
Expand Down Expand Up @@ -285,7 +284,7 @@ ui <- fluidPage(theme = "bootstrapsolar.css",

# Application title
titlePanel(title=paste0("BSeq_analyser, ",version))
,source ("../Softwareheader.R")
,source ("../Softwareheader.r")
,
# Sidebar with a slider input for number of bins
sidebarLayout(
Expand Down Expand Up @@ -425,7 +424,7 @@ server <- function(input, output, session) {
values$message <- "analysis finished"
values$Outputshtml="reports/multidim_anal_variable.html"

source("master_shiny.R")
source("master_shiny.r")
file.copy("reports/multidim_anal_variable.html", paste0("shiny__Analyse_data/www/report.html"), overwrite=TRUE,
copy.mode = TRUE, copy.date = FALSE)
# browser()
Expand Down Expand Up @@ -500,8 +499,8 @@ dataoutput2 <- reactive({
if (!length(selct_TW)) selct_TW = c(1:9)
values$message <- "analyis started"
#source <- function (x,...){source (x, local=TRUE,...)}
source("Rcode/get_behav_gp.R")
source("Rcode/plot5_hoursummaries.R")
source("Rcode/get_behav_gp.r")
source("Rcode/plot5_hoursummaries.r")
values$Outputspdf=paste0(plot.path,"/14_Minutes_Behaviours_timedtolightoff.pdf")
values$plot = pl
})
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2 changes: 1 addition & 1 deletion analysis/shiny__testandupload_data/app.R → analysis/shiny__testandupload_data/app.r
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Expand Up @@ -280,7 +280,7 @@ ui <- fluidPage(

# Application title
titlePanel("Data uploader for Bseq_analyser: Prepare your home cage monitoring data for analysis."),
source ("../Softwareheader.R"),
source ("../Softwareheader.r"),
# Sidebar
".
This app may quit abruptly in some cases, for instance if it tries to read data that it does not have access to. Check the message in the R console if it happens. ",
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