Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.

BERN2: an advanced neural biomedical namedentity recognition and normalization tool

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

视觉预训练基础模型仓库

Emacs package to reformat Python using black-macchiato

Visualize large time-series data in plotly

Official git repository for Biopython (originally converted from CVS)

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

What's in your data? Extract schema, statistics and entities from datasets

ColBERT: Contextualized Late Interaction over BERT (SIGIR'20)

A reporting pipeline for visualization of immunopeptidomics MS data.

This is the code for our paper `Fine-Tuning Pre-trained Language Model with Weak Supervision: A Contrastive-Regularized Self-Training Approach' (In Proc. of NAACL-HLT 2021).

🤗 Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.

docTR by Mindee (Document Text Recognition) - a seamless, high-performing & accessible library for OCR-related tasks powered by Deep Learning.

BioBert Pytorch

borb is a library for reading, creating and manipulating PDF files in python.

BioBERT: a pre-trained biomedical language representation model

UniLM AI - Unified "Language" Model Pre-training across Tasks, Languages, and Modalities

Open source code for AlphaFold.

The Language Interpretability Tool: Interactively analyze NLP models for model understanding in an extensible and framework agnostic interface.

Fast Data Science, AKA fds, is a CLI for Data Scientists to version control data and code at once, by conveniently wrapping git and dvc

BioELECTRA

A GUI for Pandas DataFrames

State of the Art Natural Language Processing

Pretrain and finetune ELECTRA with fastai and huggingface. (Results of the paper replicated !)

Python implementation of TextRank for phrase extraction and summarization of text documents