Lists (14)
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AMPidentifier: A modular python toolkit for predicting antimicrobial peptides using ensemble machine learning (BR 51 2025 005859-4)
Collect your thoughts and notes without leaving the command line.
ggRibo: Ribo-seq periodicity and other single-nucleotide resolution visualizer
Task manager with Todoist, Nextcloud & CalDAV support designed for GNOME
ugtm: a Python package for Generative Topographic Mapping
protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware dat…
Text editor for your terminal: easy, powerful and fast
NAMD - a parallel, object-oriented molecular dynamics code
Metrics for evaluating biological sequence design
RO-Crate explorer with subcrate support !
OpenMM is a toolkit for molecular simulation using high performance GPU code.
A flexible pipeline for complete analysis of bacterial genomes
GraphPart, a data partitioning method for ML on biological sequences
A fast static site generator in a single binary with everything built-in. https://www.getzola.org
Scans Python packages for abi3 violations and inconsistencies
BioProfileKit is a specialized bioinformatics tool that enables scientists to analyze large and diverse datasets.
A curated list of things related to python-based web development using htmx
Open standard for machine learning interoperability
Efficient matrix representations for working with tabular data
High performance Python GLMs with all the features!
A declarative, 🐻❄️-native data frame validation library.
The Refactoring library based off the Refactoring book by Martin Fowler
Vim-fork focused on extensibility and usability
Blazing fast runtime for math workloads. Execute MATLAB/Octave code with cross-OS (Mac, Windows, Linux) and cross-GPU (NVIDIA CUDA, Apple Silicon, ARM) support.