A personal knowledge management and sharing system for VSCode

Short Course on Multi-Omics

Materials for the workshop "Targeted Learning: Advanced Methods for Causal Machine Learning" at the 2023 International Biometric Society's Eastern North American Region (ENAR) Conference

Tools for statistical analysis of genomics data

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

Normalize CITEseq Data

Density-preserving data visualization tools den-SNE and densMAP

Fit Gamma-Poisson Generalized Linear Models Reliably

TCR and BCR assembly from RNA-seq data

'ggplot2' Based Publication Ready Plots

Topics In Data Science and Bioinformatics

Enhancing {ggplot2} plots with statistical analysis 📊📣

Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

Clone of the Bioconductor repository for the SingleR package.

supporting code for the multinomial single cell RNA-Seq paper

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

Normjam: a workshop on the normalization of scRNA-seq data

Lightweight pipeline for processing droplet-based single-cell RNA-seq data

Comparisons between best subset selection and other popular sparse regression estimators

R package for adaptive correlation and covariance matrix shrinkage.

GMUM machine learning group R package

R package for Enrichment Depletion Logos (EDLogos) and String Logos

An R package for adaptive shrinkage

Allele-Specific Expression by Single-Cell RNA Sequencing

Organize your project into a research website

response to the BNC paper

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Wishbone is an algorithm to align cells along developmental trajectories with branches