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Morgridge.org
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scRNAseqApp Public
single cell RNA-seq results report system
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annoLinker Public
Annotating genomic regions through chromatin interaction links
R UpdatedJan 22, 2026 -
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cdQuPath Public
Codex downstream analysis with QuPath
R GNU General Public License v3.0 UpdatedDec 10, 2025 -
geomeTriD Public
A package for interactive 3D plot of epigenetic data
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trackViewer Public
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
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ribosomeProfilingQC Public
An R package for quality assessment of ribosome profiling
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motifStack Public
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
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GeneNetworkBuilder Public
Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data
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enhancerHomologSearch Public
Get ENCODE data of enhancer region via H3K4me1 peaks and search homolog region for given sequences
C++ UpdatedNov 5, 2025 -
dagLogo Public
Visualize significant conserved amino acid sequence pattern in groups based on probability theory
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cleanUpdTSeq Public
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
R UpdatedNov 5, 2025 -
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modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedSep 17, 2025 -
hicar Public
Forked from nf-core/hicarThis pipeline analyses data for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
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geneClusterPattern Public
Plot conserved gene pattern cross multiple species
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chipseq Public
Forked from nf-core/chipseqChIP-seq peak-calling, QC and differential analysis pipeline. Hyperlink is an example of output index page.
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ratte Public
The use of RnA-seq for AnnoTation of Transpose Elements
R MIT License UpdatedJun 24, 2025 -
scPrinter Public
Forked from buenrostrolab/scPrinterJupyter Notebook MIT License UpdatedMay 8, 2025 -
chtc-containers-training Public
Forked from aowen-uwmad/chtc-containers-trainingFiles to support training on how to use containers
Shell UpdatedFeb 6, 2025 -