This package was developed to facilitate the processes of reptile nomenclature update based on a search for species synonyms according to The Reptile Databse website (Uetz et al., 2025).
Currently, the package access many species information from The Reptile Database using R interface.
I hope it to be useful, to people trying to match databases from different sources (IUCN, species traits database, etc), or trying to get summaries from a given higher taxa or region (e.g.: Snakes from Brazil). But it can also just print single species information directly in R.
Any feedback, suggestion or request are welcome!
To install the stable version of this package user must run:
# install.packages("devtools")
devtools::install_github("joao-svalencar/letsRept", ref="main")
library(letsRept)
To access the full list of functions with clear examples, browse the package vignettes:
browseVignettes("letsRept")
-
The package counts with a full list of current valid species (
allReptiles
- 12,500 species) with their respective higher taxa information (updated to 15th of September, 2025); -
A dataset with all unique synonyms for each current valid species (
allSynonyms
- 53,159 entries - updated to 23th of May, 2025); -
Another synonyms dataset with all entries considering their respective references (
allSynonymsRef
110,413 entries - updated to 23rd of May, 2025).
- Stable version 1.0.1 CRAN submission (August 18th, 2025)
- Stable version 1.0.1 CRAN release (August 22nd, 2025)
- Paper submission (August 18th, 2025)
- Package webpage development
- API development and package API compatibility
To cite this package in publications, run:
citation("letsRept")
letsRept
retrieves valuable taxonomic and synonymy data directly from the Reptile Database..
When citing this package, please also cite the original database as a data source.
Uetz, P., Freed, P, Aguilar, R., Reyes, F., Kudera, J. & Hošek, J. (eds.) (2025) The Reptile Database. http://www.reptile-database.org
Vieira-Alencar, João Paulo dos Santos ([email protected])
Ph.D in Ecology at USP
Post-Doc at: Laboratório de Evolução e Diversidade I - "LED 1" - Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, São Bernardo do Campo, SP – Brazil