Stars
Program to find drug-like RNA-ligand binding pockets.
An open-source Python package for generation of SMART probe pockets and calculation of molecular descriptors.
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…
Cell2Sentence: Teaching Large Language Models the Language of Biology
An interactive learning resource for next-generation sequencing (NGS) techniques
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
Python tool for the discovery of similar 3D structural motifs across protein structures.
Fast indexing and search of discontinuous motifs in protein structures
mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Pre…
Jsauce5p / DPAM
Forked from CongLabCode/DPAMA domain parser for Alphafold models
Sidechain conditioning and modeling for full-atom protein sequence design
Official repository for "Energy Matching: Unifying Flow Matching and Energy-Based Models for Generative Modeling" [NeurIPS 2025]
A generalized computational framework for biomolecular modeling.
The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was developed by the Bioinformatics and Machine Learning Lab at the …
Differentiable Pairing using Soft Scores
Inference code for PoET: A generative model of protein families as sequences-of-sequences