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1. specimux specimux Public

   High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

   Python 5

2. adjusted-identity adjusted-identity Public

   Calculates adjusted identity scores for DNA sequences a la MycoBLAST

   Python

3. gaphack gaphack Public

   A gap-optimized hierarchical agglomerative clustering tool for DNA barcode-based species (OTU) delimitation that attempts to maximize the barcode gap between clusters.

   Python 1

4. otunify otunify Public

   Tools for managing OTU definitions for barcoding fungi

   Python

5. speconsense speconsense Public

   Specimen sequence read clustering and consensus generation

   Python

6. taxonomize taxonomize Public

   Taxonomic classification of DNA sequences using BLAST or vsearch with configurable identity thresholds and batch processing

   Python