Downsample fastq reads for mutiple samples, at multiple depths

Run mlst on multiple samples with integrated quality control.

Perform read mapping and variant calling using snippy

Pipeline for performing routine genome assembly

Automated analysis of flu sequence data using BCCDC-PHL/FluViewer_nf

Automated pipeline for generating influenza A virus genome sequences from FASTQ data

Nextflow pipeline for influenza A whole genome sequence analysis

A tool for assessing the inclusivity of primer and probe oligonucleotides from PCR assays against numerous reference genome sequences

Repository to host tool-specific module files for the Nextflow DSL2 community!

Automated genomic analysis of HCV sequence data

Conda recipes for the bioconda channel.

Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

Data and scripts used for HIV-1 group M indel rate estimation project