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Showing results

Lightweight package for estimating the optimal lag and rolling correlation by grouping variable between two time series

R 3 1 Updated May 19, 2020

A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to rep…

R 62 22 Updated Oct 23, 2025

Lightweight package with methods to estimate infectious disease dynamics parameters

TeX 6 Updated Oct 3, 2025

R-Ladies template for Quarto presentations with reveal.js

HTML 59 14 Updated Nov 29, 2024

Repo for "School-Household networks, untangling the complex of measles Epidemiology in the Netherlands"

Jupyter Notebook 1 2 Updated Mar 12, 2024

A tool to estimate time varying instantaneous reproduction number during epidemics

R 100 41 Updated Jun 11, 2025

simple and scalable statistical modelling in R

C++ 590 67 Updated Sep 19, 2025

modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission

R 17 4 Updated Dec 7, 2023

Inference framework for serological data

R 19 7 Updated Sep 12, 2025