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Open source research data repository software

Java 1,015 532 Updated Jan 23, 2026

Forked UI for MinIO Object Storage

JavaScript 1,846 116 Updated Jun 24, 2025

High performance S3 compatible object storage focused on speed and simplicity and designed to be an open alternative to MinIO and RustFS.

Swift 176 Updated Dec 17, 2025

Code from "Shaken or Stirred? An Analysis of MetaFormer's Token Mixing for Medical Imaging"

Jupyter Notebook 3 Updated Oct 17, 2025

best effort anonymization for medical images using python

Python 169 55 Updated Jan 12, 2026

De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy

Python 19 3 Updated Jan 6, 2026
Python 4 Updated Jun 24, 2025

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

Jupyter Notebook 11,990 1,746 Updated Dec 19, 2025
Python 2 Updated Jan 23, 2026

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Python 2,442 395 Updated Jan 8, 2026

Automated lung segmentation in CT

Python 761 163 Updated Jul 11, 2025

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

SWIG 1,036 225 Updated Jan 24, 2026

Official elastix repository

C++ 551 128 Updated Jan 23, 2026

PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.

Answer Set Programming 52 22 Updated Jan 8, 2026

This repository contains the code for the ICCV 2019 paper "Occupancy Flow - 4D Reconstruction by Learning Particle Dynamics"

Python 229 28 Updated Oct 8, 2022

Code for the MIDL 2022 paper Implicit Neural Representations for Deformable Image Registration

Python 52 11 Updated Jul 2, 2024

Instructions and utilities for use of EPFL's compute cluster.

Python 25 11 Updated Nov 7, 2023

[NeurIPS'21] Shape As Points: A Differentiable Poisson Solver

Python 631 47 Updated Mar 25, 2022

DG-TTA

Python 15 Updated Apr 3, 2025

Codes and phantom data for "Dynamic Mode Decomposition of Dynamic MRI for Assessment of Pulmonary Ventilation and Perfusion"

MATLAB 2 2 Updated Nov 10, 2025

Segment Anything Model for Medical Image Segmentation: Open-Source Project Summary

1,062 76 Updated Nov 5, 2025

Experiments on unsupervised point cloud reconstruction.

Python 172 28 Updated Jun 11, 2022
Python 7,944 2,287 Updated Jan 20, 2026

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data

Python 181 41 Updated Apr 28, 2023

Deep Active Contour Network for Medical Image Segmentation

Python 20 6 Updated Nov 16, 2020

Latex code for making neural networks diagrams

TeX 24,368 3,039 Updated Aug 21, 2023