Manage multiple AI terminal agents like Claude Code, Aider, Codex, OpenCode, and Amp.

Replicating Deepseek R1 and OpenAI O series training

Entropy Based Sampling and Parallel CoT Decoding

Chai-1, SOTA model for biomolecular structure prediction

System 2 Reasoning Link Collection

Agentic components of the Llama Stack APIs

A modular graph-based Retrieval-Augmented Generation (RAG) system

A multi-factor equity risk model for quantitative trading.

Trainable PyTorch framework for developing protein, RNA and complex models.

Code for running RFdiffusion

Making Protein Design accessible to all via Google Colab!

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Code for the ProteinMPNN paper

A topological machine learning framework based on PyTorch

Making Protein folding accessible to all!

This package contains deep learning models and related scripts for RoseTTAFold

Open source code for AlphaFold 2.

Tools for the MESSAGEix-GLOBIOM family of models

The integrated assessment and energy systems model MESSAGEix