Stars
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
A simple, high-throughput file client for mounting an Amazon S3 bucket as a local file system.
Chat with your database or your datalake (SQL, CSV, parquet). PandasAI makes data analysis conversational using LLMs and RAG.
Generates an IAM policy for the CloudFormation service role that adheres to least privilege.
A curated and summarized list of bioinformatics bench-marking papers and resources.
Embeddable genomic visualization component based on the Integrative Genomics Viewer
Serverless Examples – A collection of boilerplates and examples of serverless architectures built with the Serverless Framework on AWS Lambda, Microsoft Azure, Google Cloud Functions, and more.
Bootstrap components for Plotly Dash
Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀
Mapping-free software for fishing relevant reads in an RNA-Seq sample
This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch.
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
Download market data from Yahoo! Finance's API
This is the development home of the workflow management system Snakemake. For general information, see
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
(OLD REPO) Line-by-line profiling for Python - Current repo ->
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin