Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

Manifest

supplement.html: Supplementary material
supplement.Rmd: Rmarkdown file
LICENSE: license for this repository
Makefile: main Makefile
BritishIsles.rds: outline map of the British isles
clean_data.rda: measles and demographic data for England & Wales, 1944--1964
coords.rds, distances.rds: geographic coordinates of all population centers and pairwise distances between them
sigma-bar.rds, sigma-profile.rds, tsir-fits.rds, under-reporting.rds, data-matrix.rds, susc-reconst.rds, exclusions.rds: results of the fitting of the TSIR model
gravity-mle.rds, gravity.rds: results for the gravity model
rankmat.rds, stouffer-mle.rds, stouffer.rds: results for the Stouffer model
rankmat1.rds, stouffer1-mle.rds, stouffer1.rds: results for the Stouffer model variant
compdest-mle.rds, compdest.rds, compdest_delta.rds, compdest_tau1.rds, compdest_tau2.rds: results for the competing destinations model
radmat.rds, radiation-mle.rds: results for the radiation model
radmat1.rds, radiation1-mle.rds: results for the radiation model variant
xrad1-mle.rds: results for the extended radiation model
xia-mle.rds, xia.rds: results for the Xia (2002) model
diffusion-mle.rds, diffusion.rds: results for the diffusion model
meanfield-mle.rds, meanfield.rds: results for the mean-field model

Name		Name	Last commit message	Last commit date
Latest commit History 105 Commits
.gitignore		.gitignore
BritishIsles.rds		BritishIsles.rds
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
cc-by-sa.png		cc-by-sa.png
clean_data.R		clean_data.R
clean_data.rda		clean_data.rda
compdest-mle.rds		compdest-mle.rds
compdest.rds		compdest.rds
compdest_delta.rds		compdest_delta.rds
compdest_tau1.rds		compdest_tau1.rds
compdest_tau2.rds		compdest_tau2.rds
comps.rda		comps.rda
data-matrix.rds		data-matrix.rds
diffusion-mle.rds		diffusion-mle.rds
diffusion.rds		diffusion.rds
distances.rds		distances.rds
exclusions.rds		exclusions.rds
gravity-mle.rds		gravity-mle.rds
gravity.bib		gravity.bib
gravity.rds		gravity.rds
ied.rds		ied.rds
impexp.rds		impexp.rds
meanfield-mle.rds		meanfield-mle.rds
meanfield.rds		meanfield.rds
plos.csl		plos.csl
radiation-mle.rds		radiation-mle.rds
radiation1-mle.rds		radiation1-mle.rds
radmat.rds		radmat.rds
radmat1.rds		radmat1.rds
rankmat.rds		rankmat.rds
rankmat1.rds		rankmat1.rds
sigma-bar.rds		sigma-bar.rds
sigma-profile.rds		sigma-profile.rds
stouffer-mle.rds		stouffer-mle.rds
stouffer.rds		stouffer.rds
stouffer1-mle.rds		stouffer1-mle.rds
stouffer1.rds		stouffer1.rds
supplement.R		supplement.R
supplement.Rmd		supplement.Rmd
supplement.Rout		supplement.Rout
supplement.html		supplement.html
susc-reconst.rds		susc-reconst.rds
table1.tex		table1.tex
tsir-fits.rds		tsir-fits.rds
under-reporting.rds		under-reporting.rds
xia-mle.rds		xia-mle.rds
xia.rds		xia.rds
xrad1-mle.rds		xrad1-mle.rds