Quick mining and visualization of NGS data by integrating genomic databases

GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Alternative splicing resource

A Python library to visualize and analyze long-read transcriptomes

Aggregation and analyses of rare CNVs across diseases

1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.

Sample code for working with the BioGRID REST Service API in Python

List of software packages for multi-omics analysis

Gencode UTR fix

🧬 gget enables efficient querying of genomic reference databases

A Python nearest neighbor descent for approximate nearest neighbors

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

Python library to handle Gene Ontology (GO) terms

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

IDR

Composite LIkelihood eMpirical Bayes

Scientific Inkscape: Inkscape extensions for figure resizing and editing

Bioinformatics data analysis and visualization toolkit

Tools to process and analyze deep sequencing data.

Find motifs enriched around prominent crosslinks

Motif Scan and Enrichment Analysis (MoSEA)

Gene Set Enrichment Analysis in Python