Stars
R package for "sum of single effects" regression.
Fine-mapping with infinitesimal effects
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
An implementation of the Grammar of Graphics in R
scRNA-seq Analysis of Insulin Gene Variants in Type 1 Diabetes
Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
Supplementary code repository for: A stem cell model identifies two alternative cell fates in CBFA2T3::GLIS2-driven acute megakaryoblastic leukemia initiation
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
scRNA multimodal analysis pipeline utilised for large dataset processing - capable in handeling scRNA, scATAC, Hastag Multiplexed samples
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
A single cell transcriptomics pipeline for QC, integration and making the data presentable
nf-core / scflow
Forked from combiz/nf-core-scflowPlease consider using/contributing to https://github.com/nf-core/scdownstream
ShanshanHe-44 / ldsc
Forked from bulik/ldscLD Score Regression (LDSC)
gpt-oss-120b and gpt-oss-20b are two open-weight language models by OpenAI
Positron, a next-generation data science IDE
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
koefoeden / ENCODE_rE2G
Forked from EngreitzLab/ENCODE_rE2GEnhancer-Gene Prediction Pipeline based on logistic regression and ABC model
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
An API standard for single-agent reinforcement learning environments, with popular reference environments and related utilities (formerly Gym)
R Extension for Visual Studio Code