Stars
CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
A public catalog of Benchling App examples written in Python.
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Sample scripts demonstrating how to import/export datasets from Benchling using R
A GatingML Interface for Cross Platform Cytometry Data Sharing
The python-microscopy environment - an open-source package for light microscopy
Foam low-code for coders app development framework
🥫 🎫 Automatic coupon clipper for Safeway's online "Safeway for U" coupons
This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake.…
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
basic info used to launch Sarek (nf-core) and custom NF pipelines on Google Cloud
A workflow for executing a microbiome workflow
Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure
Code and intermediate data used to generate figures and results for the manuscript describing the challenge.
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
minimal example implementations for bioinformatics workflow managers
Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility
Table of software for the analysis of single-cell RNA-seq data.
Bioinformatics Pipeline and Visualization resources
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
A curated list of nextflow based pipelines
🔬 Joint genotyping workflow for Kids-First DRC
Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files …
Deep learning based processing of Atac-seq data