TaxasRdo working group repository for fish reference database comparison manuscript.

Qiime2 Pipeline Annotated for First-time Coders. Learn Here!

eDNA metadata template generator

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

Open Lab Notebook

NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design

A commenting system powered by GitHub Discussions. 💬 💎

Find sex specific loci from genome-wide genetic markers.

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

Written by Emily Curd ([email protected]), Jesse Gomer ([email protected]), Gaurav Kandlikar ([email protected]), Zack Gold ([email protected]), Max Ogden ([email protected]), Lenore Pipes (lpipe…

This site provides information on conducting reproducible science using the R language.

A library of standard population genetic models

An approach that iteratively generates pseudoreferences, incorporating sample-specific variation and reducing mapping biases

a bash pipeline for RAD sequencing

Scripts for the optimization of RADseq clustering thresholds in population genetics

Successful Job Applications and Grants

Protocol for Expressed Exome Capture Sequencing

3’ Tag RNA-seq pipeline (Work in progress)

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants

This repository provides data and scripts to analyze the influence of ocean acidification on juvenile geoduck DNA methylation and phenotype.