Python Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set

Various utility functions and datatypes for SQLAlchemy.

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus.

Python library to identify Identical By State regions

A lightweight library for working with PAF (Pairwise mApping Format) files

Fast reference-guided genome assembly scaffolding

A conda-smithy repository for fastnumbers.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

A conda-smithy repository for conda-package-handling.

Splice junction analysis and filtering from BAM files

Extensive de-novo TE Annotator

Ultrafast GPU-based QTL mapper

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

A python3 package for operations on pedigree and genotype data

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

Nanopore sequence read simulator

A conda-smithy repository for sqlalchemy-utils.

Official home of genome aligner based upon notion of Cactus graphs

A conda-smithy repository for git.

A fully reproducible and state of the art ancient DNA analysis pipeline.

A basecaller for Oxford Nanopore Technologies' sequencers

Sequential regulatory activity predictions with deep convolutional neural networks.

Transcriptome Annotation by Modular Algorithms (for Iso-Seq data)

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

A light-weight wrapper library around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular