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marcs Public
Modification Atlas of Regulation by Chromatin States
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palettable2gpl Public
Palettable color palettes in GPL format to use with Inkscape or Gimp
Python Other UpdatedMay 3, 2024 -
Code accompanying the data analyses of our MARCS manuscript.
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Some further post-processing of data from Rodriguez-Martinez et al. eLife 2017;6:e19272
Python MIT License UpdatedDec 8, 2022 -
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docker-excelcompare Public
A lightweight docker image for ExcelCompare https://github.com/na-ka-na/ExcelCompare
Dockerfile MIT License UpdatedMar 22, 2022 -
obsidian-highlighter-theme Public
Makes obsidian notes look like printed text annotated with highlighter.
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docker-development-environments Public archive
Repository for development environments for my various projects
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compbio-notebook Public
A blend between `scipy-notebook` and `r-notebook` tailored for Computational Biology
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seimo-rinkimai-2020 Public
Short analysis of Lithuanian Politics for 2020 elections (In Lithuanian)
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bokeh-cytoscape-cola Public archive
Bokeh integration with cytoscape.js & cola.js
TypeScript MIT License UpdatedOct 6, 2020 -
bokeh-selectize Public archive
Selectize.js integration with Bokeh
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docker-bokeh Public archive
Dockerfile for serving bokeh visualisations
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dtwco Public archive
dtwco: constrained Dynamic Time Warping implementation in python
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tmma Public
MA plots and TMM for python
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publications-nakamura-2018-snap-h4k20me2 Public archive
Source code for the data presented in Nakamura et al. 2018 publication
Jupyter Notebook UpdatedAug 29, 2020 -
sublime_zk Public
Forked from renerocksai/sublime_zkA SublimeText3 package featuring ID based wiki style links, and #tags, intended for zettelkasten method users. Loaded with tons of features like inline image display, sophisticated tag search, note…
Python Other UpdatedMay 24, 2020 -
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gephi-toolkit-forceatlas2-standalone Public archive
Standalone JAR for Forceatlas2 layout from Gephi Toolkit
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seaborn Public
Forked from mwaskom/seabornStatistical data visualization using matplotlib
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 18, 2018 -
chip-aligning-pipeline Public archive
Pipeline for aligning ChIP seq reads from SRA files to reference genome
Python UpdatedSep 1, 2018 -
bernoulli-mixture-model Public archive
Implementation of Bernoulli Mixture Models in Python
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normpy Public archive
Forked from yarden/normpyNormalization methods for RNA-Seq expression data in Python.
Python UpdatedFeb 14, 2018 -
ggExtra Public archive
Forked from daattali/ggExtraAdd marginal histograms to ggplot2, and more ggplot2 enhancements
R Other UpdatedNov 7, 2017 -
python-croc Public archive
Fork of https://pypi.python.org/pypi/CROC/ with support of py3. Original implementation by S. Joshua Swamidass
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python-lopc Public archive
Python implementation of LOPC, see https://github.com/Hurricaner1989/LOPC-Matlab-package/
Python MIT License UpdatedMar 20, 2017 -
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