A robust and fast clustering method for amplicon-based studies

Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

FRACTAL: framework for distributed computing to trace large accurate lineages

preparation of many diversified Sequences by simulation of evolutionary process

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

Docker containers for bioinformatics with a small footprint

Making Protein folding accessible to all!

Code and manual of the endoR R-package (Ruaud et al, in preparation).

trRosetta for protein design

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A curated list of awesome Bioinformatics libraries and software.

Useful bash one-liners for bioinformatics.

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

Stand-alone software package of PureseqTM for transmembrane topology prediction from amino acid sequence only.

GWAS Pipeline for H3Africa

Models and datasets for perturbational single-cell omics

Single-cell Transcriptome and Regulome Analysis Pipeline

A tool to find sequencing data and metadata from public databases.

Create beautiful Gantt charts with ggplot2

A curated collection of Nextflow implementation patterns

Accelerated BLAST compatible local sequence aligner.

Finds candidate kmers with high variability between an inclusion and an exclusion group to design qPCR assays.

🔏 Opinionated, typographic-centric ggplot2 themes and theme components

Tools for the analysis of structural variation in genomes

Message Passing Neural Networks for Molecule Property Prediction

Bioinformatics program inStrain

Rapid comparison and dereplication of genomes

A toolbox for improving metagenome-assembled genomes.

phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.