Stars
Assembling phage particles one protein at a time
Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling
Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
Repository of bioinformatics tools, pipelines, recipes and more, with a focus on bacteriophages.
Comprehensive analysis of Genbank prophage distributions
Naming avoiding ambiguity automatically assigning valid identifiers
A python implementation of flux balance analysis to model microbial metabolism
Sets up an autoscaled Jetstream cluster for SRA work
Sequencing and analysis of crAssphage regions from around the globe
The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.