Version 5 of the CAFE phylogenetics software

Reconstruct Ancestral State in Phylogenies

Useful bioinformatic scripts

Scripts associated with 'Chromosome Evolution in Lepidoptera' manuscript

Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

Pipeline to identify repetitive elements on non-model species genomes.

Eukaryotic Genome Annotation Pipeline

Earth Biogenome Project (pilot project repo)

PASA software

usegalaxy.* common tools

Genome assembly evaluation tool

Genome Annotation Pipeline

吴恩达老师的机器学习课程个人笔记

Aggregate results from bioinformatics analyses across many samples into a single report.

Notebooks for detection and classification model training. Insect classification model. Python scripts for processing of data, collected with the Insect Detect DIY camera trap.

The Rails app behind iNaturalist.org

open-source 3D scanning and processing pipeline

NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www.nipgr.res.in/ngsqctoolkit.html)

A topic-centric list of HQ open datasets.

Master programming by recreating your favorite technologies from scratch.

freeCodeCamp.org's open-source codebase and curriculum. Learn math, programming, and computer science for free.

This repository offers a tutorial for assembling RADseq data and performing basic population genetic and phylogenetic analyses. It runs on Google Cloud Platform using Jupyter notebooks and covers R…

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Gene prediction software

A book covering the fundamentals of data visualization

This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Providence, Rhode Island

Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.

Project Title: WingScanner - AI-based Image Classification for Ants and Bees in the Hymenoptera Family