Official repository for the Boltz biomolecular interaction models

Context and recommendations for using Claude code for bioinformatics

Chat with your documents using local AI

Tools for handling Unique Molecular Identifiers in NGS data sets

High accuracy RAG for answering questions from scientific documents with citations

Neural networks for deep mutational scanning data

Deep functional residue identification

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Active learning code for designing synthetic cis-regulatory sequences

a framework for training sequence-level deep learning networks

Deep learning model for the regulatory grammar of CRX-dependent enhancers and silencers and code to reproduce analyses related to the manuscript

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Dashboard for the Inference and Analysis of Networks from Expression data

Python package designed for single-cell calling cards data

Repo for my thesis. Combining oxDNA and mrDNA for faster simulation while maintaining oxDNA complexity

R tools for Agilent electrophoresis data

Aggregate results from bioinformatics analyses across many samples into a single report.

Suite of tools for processing BRB-seq data

Detects the individual coffee grounds in a white-background picture to determine particle size distribution