Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

pipeline to identify and annotate soloLTR sequences

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

南邮体育场地预约脚本

A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common sequencing data including long-reads and Hi-C.

scripts for the project of seven thaliana genomes assembly

An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes

A tool for quick and accurate calculation of syntenic diversity.

A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads

TEtrimmer: a novel tool to automate manual curation of transposable elements

Genome browser and variant annotation

High-precision TE Annotator

Methylation/modified base calling separated from basecalling.

Easy353 is a tool for recovering Angiosperms353 gene set.

HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm

Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye

Read, manipulate and visualize 'Pairwise mApping Format' data in R

Noise-Cancelling Repeat Finder

WFA-lib: Wavefront alignment algorithm library v2

An ultra-fast and efficient genomic tool for coverage calculation

DNA序列比对结果 可视化展示工具

A list of interesting genome browser and genome visualization programs

A fast tool for detecting and decomposing segmental duplications in genome assemblies

Make colorful identity heatmaps of genomic sequence

python module to plot beautiful and highly customizable genome browser tracks

高颜值的第三方网易云播放器，支持 Windows / macOS / Linux

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

RepeatIdentifier